PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598688.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 383aa    MW: 43845 Da    PI: 5.0663
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598688.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.21.1e-5541311128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+ ++ky++g+r+nratk+gyWkatgkd++v 
  XP_009598688.1   4 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPCNRKYPNGSRTNRATKAGYWKATGKDRKVN 97 
                     79****************************.99***************6434555777************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s + ++vg+kktLv+y+grap+g +t+Wvmheyrl
  XP_009598688.1  98 S-QMRAVGMKKTLVYYRGRAPHGARTHWVMHEYRL 131
                     *.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-622154IPR003441NAC domain
PROSITE profilePS5100560.2694154IPR003441NAC domain
PfamPF023651.1E-295131IPR003441NAC domain
PROSITE profilePS510055.949367383IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVSLPPGFRF HPTDEELVAY YLKRKINGRK IELEIIPEVD LYKCEPWDLP GKSLLPSKDL  60
EWYFFSPCNR KYPNGSRTNR ATKAGYWKAT GKDRKVNSQM RAVGMKKTLV YYRGRAPHGA  120
RTHWVMHEYR LDERECEVAN GLQDGYALCR IFKKSLNAPK VVDLYYDDNM ESSDYRRPTQ  180
GSPFHVAAAG PSDDNKWSQC LSSDEAFSFN STTPSIPNYG TLTYAPPKVN IALPPLEVHD  240
FPQAGYVNYS TILPQSSYNI NQNTNQTDIV QQILSVTQAS QDHVNEDSFG GNYTQVADDF  300
SFLPHNDNQI HDLGSFNFDE DFKSDRIVEN LRWIGMSDMD LEKAFLEDYK TVPIDNVSGV  360
LKEEYELEGG YGFEPWKQPL AEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-55216018174NAC domain-containing protein 19
3swm_B1e-55216018174NAC domain-containing protein 19
3swm_C1e-55216018174NAC domain-containing protein 19
3swm_D1e-55216018174NAC domain-containing protein 19
3swp_A1e-55216018174NAC domain-containing protein 19
3swp_B1e-55216018174NAC domain-containing protein 19
3swp_C1e-55216018174NAC domain-containing protein 19
3swp_D1e-55216018174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-36HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598688.10.0PREDICTED: protein BEARSKIN1-like isoform X2
SwissprotQ9FFI53e-93NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A068U2961e-167A0A068U296_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000553221e-164(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-122NAC domain containing protein 28